Oct 29, 2014 Open the macro in the Fiji Script Editor, type cmd-A (Select All), cmd-C (Copy), close the Script Editor and type cmd-V (Paste). The macro will open in an ImageJ macro editor window (named “Clipboard”) that has a Debug menu. On Linux and Windows, use. Templates ImageJ 1.x Examples Process Folder (IJ1 Macro) Example script to count nuclei in multiple images in a folder/subfolders: /. Macro to count nuclei in multiple images in a folder/subfolders. If you break your code and need to back up, you still have a functional copy of the original macro. Test your macro in stages. First make sure it will process one image the way you expect, then expand to auto-processing a folder with three or four test images, THEN run your macro on all of your images.
Imagej Macro If Function
I have written a macro for Fiji ImageJ(1.52n) to analyze particles. Beside i wrote a python (3.7) code wich deals with the result Data out of the particle analyze.
I would love to implement the ImageJ Macro into the Python code -- So start ImageJ out of python, start macro and close again.
So far i tried fijibin (https://github.com/arve0/fijibin) and pyimagej (https://github.com/imagej/pyimagej).Fijibin does not work at all. With pyimage the import works but the communication with imagej not. Fijibin does not work at all.
I use the numpy functions in python.
I except ImageJ to start.
